dripSearch

Usage:

./dripSearch.py [options] --spectra <spectra file> --digest-dir <protein database>

Description:

DripSearch utilizes a DBN for Rapid Identification of Peptides (DRIP) to identify peptides from tandem mass spectra. DRIP is primarily used for high peptide identification accuracy and improved derived features regarding PSMs (the latter is utilized in dripExtract). Model parameters may also be learned via expectation-maximization (implemented in dripTrain) and utilized during search for improved accuracy. If you use DRIP in your research, please cite:

John T. Halloran, Jeff A. Bilmes, and William S. Noble. "Learning Peptide-Spectrum Alignment Models for Tandem Mass Spectrometry". Thirtieth Conference on Uncertainty in Artificial Intelligence (UAI 2014). AUAI, Quebic City, Quebec Canada, July 2014.

Input:

Output:

The following directories will be created:

Options:

Example usage:


DRIP Toolkit home