dripDigest

Usage:

./dripDigest.py [options] --fasta <protein database>

Description:

DripDigest digests a protein database (FASTA file) efficiently given a fixed memory budget. The resulting peptide database is output in a compact binary format utilized by dripSearch of the DRIP toolkit. If you use dripDigest in your research, please cite:

John T. Halloran, Jeff A. Bilmes, and William S. Noble. "Learning Peptide-Spectrum Alignment Models for Tandem Mass Spectrometry". Thirtieth Conference on Uncertainty in Artificial Intelligence (UAI 2014). AUAI, Quebic City, Quebec Canada, July 2014.

Input:

Output:

The program writes files to the folder dripDigest-output by default. The name of the output folder can be set by the user using the --digest-dir option. The following files will be created:

Options:

Example usage:


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